PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07559.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 1108aa    MW: 122661 Da    PI: 6.5927
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07559.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.9e-21134233197
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v
  Sme2.5_07559.1_g00001.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSV 218
                              99*****************************9545444.38********************************************* PP

                              EEEE-SSSEE..EEEEE CS
                       B3  81 vFkldgrsefelvvkvf 97 
                              +F   ++++++l+++++
  Sme2.5_07559.1_g00001.1 219 LFI--RDEKQQLLLGIR 233
                              ***..457777888876 PP

2Auxin_resp117.61e-38260343183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aaha +++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sme2.5_07559.1_g00001.1 260 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                              799******************************99879********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-43124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40125249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-18133225No hitNo description
PfamPF023626.3E-19134233IPR003340B3 DNA binding domain
SMARTSM010194.3E-20134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293134236IPR003340B3 DNA binding domain
PfamPF065076.1E-34260343IPR010525Auxin response factor
PfamPF023095.3E-79961082IPR033389AUX/IAA domain
PROSITE profilePS5174527.8219971081IPR000270PB1 domain
SuperFamilySSF542771.08E-610101075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MKTSAGVQQQ QHTVNGNNPA EVEKKSINQE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH  180
DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRWANRQPT  240
NLSSSVLSSD SMHIGILAAA AHASANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGEKRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDYSDLDGL FKRTMPWLGD DFGMKDPQGL  420
PGLSLVQWMN MQQNPSLANS MQPNYLHSLC GSVLQNVGGG ADLSRQLGLP APQQNTLQFG  480
SQRPTQQGQQ LDQLQKLPTT TLSPAGSIMQ SQQQLSDISQ QPRQNLINQS VPTNHVQAQL  540
LQAQSLAQSQ NVLQQQQSFQ NQLQRNLPQN RPQQQQVMNQ TQQQSFMPPQ PSDPPNQQLH  600
FSDNQIPMQL LQKLHQQQQS LLAQQSLMQQ TSQLGPIQDQ QKQLLDVSQN FSRSLATSQM  660
LDMSQTTSTS TSLSQSQVAQ QQMTINNTQP NLRFAQPNQH MKQQQQQGIL PELPGQVGQV  720
LPPTTNQLSA NCSSYLTGPA GGGQSVITDD IPSCSTSPST NNCLSAVQPI MNGRIHRGTA  780
AADETTQSSL PLLSSSGLEA MSPNRNLVKD LQQKSDVKPS LNISKSHNHG FLTPQTYLST  840
AVPQMDYLDS SSSATSVCFS QNDVQLPQTT NPMSFSSQPV VFRDSQDGEV QGDPRNSVAF  900
GANMDNQLGI PIMPDSLITN SLVGSRKDVS NNISSGGGML SSYENPKDAQ PELSSSMVSQ  960
SFGVPDMAFN SIDSTINEGS FMNRGAWAAP PQMPRMRTYT KVYKRGAVGR SIDITRYSGY  1020
EELKQDLARR FGIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ  1080
EVQQMSLDGD FGNNVQNQAC SSSDGGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1692336447388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580257.10.0PREDICTED: auxin response factor 19-like
TrEMBLK4CCD50.0K4CCD5_SOLLC; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19